Main Menu
Search
Close this search box.
Myalgic Encephalomyelitis / Chronic Fatigue Syndrome (ME / CFS) Post Treatment Lyme Disease Syndrome (PTLDS), Fibromyalgia Leading Research. Delivering Hope.Open Medicine Foundation® Canada
Donate
Sign Up

OMF Data Center

Technology Value

The purpose of the OMF Data Center is to house raw data and processed results, which is shared with our research network through the web-based data portal.

LEAD INVESTIGATORS
  • Wenzhong Xiao, PhD
Updates and Potential
  • The OMF Data Center is established for online sharing of research data on ME/CFS and online collaboration.
  • We plan to host additional datasets on ME/CFS, Long COVID and related diseases.
TECHNOLOGY DESCRIPTION

The Collaborative Data Center Platform project at the OMF Computational Research Center is to develop and establish a web based computational platform enabling collaborative research centers, investigators and collaborators to store, share, visualize, and discuss their datasets and results online. The goal is to disseminate the information and to foster new insights, hypotheses, and research on ME/CFS, and related diseases.

OBJECTIVES

A pen on a paper with several charts and graphs.

  1. Develop the OMF Data Center using a leading open source data management platform for publishing, sharing, finding, and using data.
  2. Develop online analysis and visualization tools using a platform-independent browser-based business analytics tool.
  3. Through querying and integration of multiple studies, curate meta data and omics data of the studies on ME/CFS using standard vocabularies.
  4. Integrate a knowledge base and collect data sets on ME/CFS and other related diseases.
  5. Support the ME/CFS research community and other users to understand and utilize the data in the platform in order to generate and test their own hypotheses.

Consent management

Consent Preferences

Data Subject Access Request (DSAR) Form 

Microvesicles and viral sequencing
Microvesicles are a type of extracellular vesicle that is released from the cell membrane. Vesicles are small, fluid-filled sacs or vacuoles within the body. Sequencing is a technique used to determine the exact sequence of bases (A, C, G, and T) in a DNA (or viral) molecule.
NMR Metabolomics
NMR (Nuclear Magnetic Resonance) is an instrument/tool used to perform metabolic studies, metabolic profiling, and metabolomics in biofluids and tissues for more than 40 years using magnetic fields. There is a very close connection between metabolic measurements and NMR. This connection has flourished because of NMR’s many unique strengths for characterizing complex mixtures’ chemical composition.
Proteomics
The large-scale study of proteins, which are large, complex molecules that are required for structure, function, and regulation of the human body's tissues and organs.
Autoantibodies
Antibodies that react with self-molecules and that occur in healthy individuals and are referred to as natural antibodies or autoantibodies.
Extracellular DNA for viral reactivation and Mitochondrial DNA
exDNA (extracellular DNA), exDNA is often secreted actively and is used to perform several tasks, thereby offering an attractive target or tool for biotechnological, medical, environmental, and general microbiological applications. Viruses are intracellular parasites that rely to a significant extent on the host cell for replication. Viral reactivation occurs when an active replication of the viral genome results in a lytic (degradation of the cell) infection characterized by the release of new progeny (descendant) virus particles.
Immune cell profiling
The immune system has many important regulatory roles in disease development and progression. Given the emergence of effective immune therapies, reliable predictors of response are needed. Immune cell profiling determines response by evaluating immune cell populations from treated and untreated samples. For our purposes, we will evaluate the white blood cell response to the viral infection using a process called “Cytof.”
Leukocyte Genomics
A leukocyte is a colorless cell circulating in the blood and body fluids and is involved in counteracting foreign substances and disease. A genome is all genetic material of an organism. Genomics is a biology field focusing on the structure, function, evolution, mapping, and editing of genomes. Therefore, leukocyte genomics is the study of all genetic material of leukocytes.
Metabolomics
Metabolomics is a way to study metabolism – that is, through measuring amounts of the metabolites (small molecules) produced by our bodies as we convert food into energy and other molecules that our cells need to survive. Metabolomics technology is ‘large-scale,’ meaning that several thousand metabolites can be measured from a single sample of e.g., blood or urine.
Micro RNA
Cells use Micro RNA to control whether a particular gene is making too much, too little or the normal amount of its protein at a particular time.